PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_06.279

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 386aa MW: 44654.5 Da PI: 8.3433

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_06.279	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.5	6.1e-07	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ sF+ + +Lk+H++ H evm.model.AsparagusV1_06.279 83 YTCEECDASFTKPAYLKQHMQGH 105 9*******************988 PP
2	zf-C2H2	17.8	9.3e-06	111	135	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ ++rk++L+rH+ +H evm.model.AsparagusV1_06.279 111 FSCPveDCHLNYRRKDHLTRHLLLH 135 89********************998 PP
3	zf-C2H2	15.6	4.6e-05	140	165	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp +C+k+F + n++rH + H evm.model.AsparagusV1_06.279 140 FDCPieNCNKRFAFQGNMTRHVKEmH 165 679999****************9988 PP
4	zf-C2H2	19.8	2.1e-06	177	201	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp Cgk+F+ s L++H +H evm.model.AsparagusV1_06.279 177 YVCPevGCGKMFKYASRLRKHEDSH 201 9********************9888 PP
5	zf-C2H2	18.2	7e-06	268	292	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +C+ C ++Fs++snL++H + H evm.model.AsparagusV1_06.279 268 RCSfeGCQYTFSNRSNLNKHVKAvH 292 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MTDSSPTSVT GHEMESRSAE DERGEIKKPI FRDIRRYYCE YCGICRSKKS LIRSHVLTHH 60 QDEVKGPEAE KNDSEKNAGK VQYTCEECDA SFTKPAYLKQ HMQGHSLERP FSCPVEDCHL 120 NYRRKDHLTR HLLLHLGKLF DCPIENCNKR FAFQGNMTRH VKEMHDEESS SEGEKQYVCP 180 EVGCGKMFKY ASRLRKHEDS HVKLDYVEVI CGEQGCLKKF TDSYCLRAHV QSCHQYVVCE 240 ICGTQQLKKN LKRHLRIHEG SGEAERIRCS FEGCQYTFSN RSNLNKHVKA VHDELRPFPC 300 RISGCGQKFP YKHVRDNHEK SGAHVHVLGD FVEADERWRS QPRGGRKRKD FSIEMLKRKR 360 VAPLGQDSAI SDGANYLRWL LSDDQ*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MTDSSPTSVT GHEMESRSAE DERGEIKKPI FRDIRRYYCE YCGICRSKKS LIRSHVLTHH  60
QDEVKGPEAE KNDSEKNAGK VQYTCEECDA SFTKPAYLKQ HMQGHSLERP FSCPVEDCHL  120
NYRRKDHLTR HLLLHLGKLF DCPIENCNKR FAFQGNMTRH VKEMHDEESS SEGEKQYVCP  180
EVGCGKMFKY ASRLRKHEDS HVKLDYVEVI CGEQGCLKKF TDSYCLRAHV QSCHQYVVCE  240
ICGTQQLKKN LKRHLRIHEG SGEAERIRCS FEGCQYTFSN RSNLNKHVKA VHDELRPFPC  300
RISGCGQKFP YKHVRDNHEK SGAHVHVLGD FVEADERWRS QPRGGRKRKD FSIEMLKRKR  360
VAPLGQDSAI SDGANYLRWL LSDDQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	346	360	RKRKDFSIEMLKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-119	C2H2 family protein