PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_06.33

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

LSD

Protein Properties

Length: 171aa MW: 18089.1 Da PI: 8.5511

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_06.33	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.2	2.4e-12	7	29	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C gCr++L YPrGA++V+Ca+C evm.model.AsparagusV1_06.33 7 CDGCRNVLLYPRGATNVCCAICS 29 **********************7 PP
2	zf-LSD1	38.5	1.9e-12	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+CrtlL+ ++GA+sVRC++C tV evm.model.AsparagusV1_06.33 46 CGNCRTLLMHTPGATSVRCSCCSTV 70 ***********************99 PP
3	zf-LSD1	42	1.6e-13	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C +Crt+L YP+GApsV+Ca+C+ evm.model.AsparagusV1_06.33 84 CAQCRTTLVYPYGAPSVKCAICHY 107 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MQSQLVCDGC RNVLLYPRGA TNVCCAICSM ITPVPLPGME MAQLICGNCR TLLMHTPGAT 60 SVRCSCCSTV NLPRSVDRVA NVSCAQCRTT LVYPYGAPSV KCAICHYITN VGMGSMRVPI 120 PFNRPNEAAV NTPSTSSSNS QTVVVENPMS RDARGKLVSN VVVGVTTDKK *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-58	LSD family protein