PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_06.704
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family LBD
Protein Properties Length: 192aa    MW: 20647.6 Da    PI: 9.1457
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_06.704genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.92.7e-274109199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFG..asnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                   +C++C++lr++C+++C ++p++     p+eq++++ +++k++G  ++ +++l++++pe+ r+++++sl+yeA+ r+ +P++
  evm.model.AsparagusV1_06.704   4 SCNGCRILRKGCSESCSIRPCLrwlrnPEEQANATLFLAKFYGygRAGLMSLITSAPEQLRPAIFRSLMYEACGRIVNPIQ 84 
                                   6****************************************86226789******************************** PP

                        DUF260  75 Gavgvilklqqqleqlkaelallke 99 
                                   G+vg++++++++++++++e +l ++
  evm.model.AsparagusV1_06.704  85 GSVGLLSSGNWHVCEAAVESVLKGS 109
                                   *****************99988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MRMSCNGCRI LRKGCSESCS IRPCLRWLRN PEEQANATLF LAKFYGYGRA GLMSLITSAP  60
EQLRPAIFRS LMYEACGRIV NPIQGSVGLL SSGNWHVCEA AVESVLKGSP ITTNPNFRTY  120
DIRHVPREPG PPAGPSKVVK NRARFRRSVS QTGSGSGLGS VELEGSNVTE AEDEVRLDLE  180
LGLGPPGARA G*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-64LBD family protein