PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1014
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 339aa    MW: 36909 Da    PI: 7.8445
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1014genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.5e-074570227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                   ++  C+ff r+G C +G+rC+++H++
  evm.model.AsparagusV1_07.1014 45 GEQDCSFFIRNGCCAFGGRCRYNHPR 70
                                   6789********************96 PP
2zf-CCCH31.33.5e-1092116327
                                    S---SGGGGTS--TTTTT-SS-SSS CS
                        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                    ++ C ff++tG C++G+ Ck++H++
  evm.model.AsparagusV1_07.1014  92 QPVCEFFLKTGKCRFGPLCKYHHPK 116
                                    689********************96 PP
3zf-CCCH36.96.3e-12134159227
                                    -S---SGGGGTS--TTTTT-SS-SSS CS
                        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                    ++++C+++ +tG+Ck+G+ CkF H++
  evm.model.AsparagusV1_07.1014 134 GERECSYYVKTGQCKFGSACKFDHPQ 159
                                    789*********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MVRFSRSAAV DGIHPDPSTG LEGSMGRLGL GSNSSEDWVY PERPGEQDCS FFIRNGCCAF  60
GGRCRYNHPR DRCVESNAAK LGGSEYPERV GQPVCEFFLK TGKCRFGPLC KYHHPKHGVG  120
SVLLNNSGYP LRQGERECSY YVKTGQCKFG SACKFDHPQP ISPSIQSPPP ATYPMVQPPF  180
VPPSQPYPSL PSWQVGNPSI SPTSCMPGFY GPILVSPSIV PVPGWSPYEQ PVSPVVYPCG  240
QQMVQAGLSY PVHYQSSPTS AYPGPYLPIS SSTRPSSVHQ KVPEGQGKTV CQYYMKTGIC  300
GLGFCDPEAV RWSESCLIFI LIPDLVYLQP FGAYTVDV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.13e-68C3H family protein