PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.1058

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 395aa MW: 44220.3 Da PI: 7.236

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.1058	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl evm.model.AsparagusV1_07.1058 14 KGLWSPEEDEKLLKHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.7	3.1e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l++d+++ lG++ W+ Ia+ ++ gRt++++k+ w++ evm.model.AsparagusV1_07.1058 67 RGTFSQQEENLIIDLHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLKHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENLIID LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPNTHKPLS ETEAAEEEKV ATASSNKTST SLPDTAPNPT VHVPPLSLIS SKSESSISST 180 KDFFLESSSS SQASNLMSSF PLTSHNQHLW LNRNNRLLGM NPEFDCNGMS TVIPSVSSSI 240 LLPSMGLKPT INMPPDNSNG IQYWEAGDAS NSSRSSRMEL NSNSSFIDGS MFSWTDLLQD 300 KTSQLNLDEE AEELKWSEYL QGAYPISAAL QNQSQPLYSE IKSESQFSIE GYGSWQQNQQ 360 PQQQQQQQSQ AQLPSSELYN GKDFQRISAV FGHI*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLKHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENLIID LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPLS ETEAAEEEKV ATASSNKTST SLPDTAPNPT VHVPPLSLIS SKSESSISST  180
KDFFLESSSS SQASNLMSSF PLTSHNQHLW LNRNNRLLGM NPEFDCNGMS TVIPSVSSSI  240
LLPSMGLKPT INMPPDNSNG IQYWEAGDAS NSSRSSRMEL NSNSSFIDGS MFSWTDLLQD  300
KTSQLNLDEE AEELKWSEYL QGAYPISAAL QNQSQPLYSE IKSESQFSIE GYGSWQQNQQ  360
PQQQQQQQSQ AQLPSSELYN GKDFQRISAV FGHI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	6e-87	MYB family protein