PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1163
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 137aa    MW: 14877.7 Da    PI: 8.7255
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1163genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.4e-095575626
                                   -SGGGGTS--TTTTT-SS-SS CS
                        zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                                   C++f rtG CkyGd+Ck+ H+
  evm.model.AsparagusV1_07.1163 55 CHHFVRTGNCKYGDSCKYFHP 75
                                   ******************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    
MPLGKYYCDY CDKQFQDTHF ARKRHLSGSQ HQRARAQWYD SFKGPHGGPL QLGVCHHFVR  60
TGNCKYGDSC KYFHPVQTAV NTTPTLSGPG SLGANPFVGV GSVSGDQTGV SWGNLPPSLR  120
PPPEGGYPPL PFLDWG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.16e-25C3H family protein