PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1206
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB_related
Protein Properties Length: 244aa    MW: 27578.8 Da    PI: 7.5032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1206genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-175396146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                   rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  evm.model.AsparagusV1_07.1206 53 RGNITPEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 96
                                   7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MGGAGFDVHG GAYMSSSTSP QSDEDMELRR GLKRTGKSCR LRWLNYLRPD VRRGNITPEE  60
QLLILELHSR WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK HAKQLQCDVN SKQFKDVMRY  120
LWMPRLLERI QAANPGGDRT AVYQNHPTQL GGDQTKASGG ELXXXXESSA VTQLSSPATV  180
TTSGQVMSQF NGECWSSWAE APLPSPCGYP NLGLPDFDWW PSGDFSESLW SMEDNWVIQQ  240
QQS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-62MYB family protein