PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1345
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 229aa    MW: 24670.8 Da    PI: 7.7529
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1345genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.5e-10159183226
                                    -S---SGGGGTS--TTTTT-SS-SS CS
                        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                    ktelC+ + ++G C+y drC+FaHg
  evm.model.AsparagusV1_07.1345 159 KTELCNKWGEMGCCPYSDRCQFAHG 183
                                    8***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MAIRELQQMV NRYNDCYLQL KDAVTAVEML REENLQLAAK NLELDFLLED MERAEVIGVS  60
PAARSVRKGS DLDSSGGSGS GSGSGLSSIS GSGPGSGSHG ARGLPKSISI RSRGFLAINQ  120
PDPGGAHRVR LPVSPALAQD GDKEKAEVEL DAYSQGNAKT ELCNKWGEMG CCPYSDRCQF  180
AHGIEELRPV IRHPRYKTQL CRMMGSGGDC PYGHRCHFRH AQQPTAPK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-43C3H family protein