PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1613
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 157aa    MW: 18292 Da    PI: 7.7727
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1613genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS194.37.7e-602151225374
                           GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                                    +++L+ +++lsPk+vvv+eqe++hn+++  erf+eal++y++lfd+le ++pr s er+ vE+ llg+ei+n++aceg e
  evm.model.AsparagusV1_07.1613   2 ERFLSSLWGLSPKIVVVTEQESNHNGATMNERFVEALNFYATLFDCLELTVPRGSTERMRVEKLLLGEEIKNIIACEGVE 81 
                                    579***************************************************************************** PP

                           GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                    rrerhe+le+W +r+e+aGF+ vpls++   qa+++l+ ++ d y+v+ee g+++++W+dr+L+svSaWr
  evm.model.AsparagusV1_07.1613  82 RRERHEKLERWVQRFEAAGFGRVPLSYYGLLQARRMLQSFGCDAYKVKEEGGCFFMCWQDRALFSVSAWR 151
                                    *****************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MERFLSSLWG LSPKIVVVTE QESNHNGATM NERFVEALNF YATLFDCLEL TVPRGSTERM  60
RVEKLLLGEE IKNIIACEGV ERRERHEKLE RWVQRFEAAG FGRVPLSYYG LLQARRMLQS  120
FGCDAYKVKE EGGCFFMCWQ DRALFSVSAW RCRRYD*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-77GRAS family protein