PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.1625

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

HB-other

Protein Properties

Length: 451aa MW: 51527.8 Da PI: 9.0511

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.1625	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	18	74	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR+ t+ q+++Le+++++++yps++++ + Ak++gL+e+qV WF+ rR k+k+ evm.model.AsparagusV1_07.1625 18 KSKRRLKTPAQVQALEKFYNEHKYPSESMKLQFAKQIGLSEKQVAGWFCHRRSKDKR 74 6799***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MEDSDDMDCE RDNHFLEKSK RRLKTPAQVQ ALEKFYNEHK YPSESMKLQF AKQIGLSEKQ 60 VAGWFCHRRS KDKRLLQDEC YVNRKQNPSA VAIHDSTSGF GQESCNSTKQ VDRYFDGKEV 120 ESNRFHGKKN SAAVPEQRGK LSHVNVVDDQ SSGSSTTSYE RLLKQGVDED CMYTNIKNGT 180 KRGYMVEKRS SYLLDYVESP AVSMVKLKLG REYHEDGPPL ATDFDPLPPG AFDSPVRDAD 240 NEPYYVGDPI QPRSCSIDVI AGNNERYNKF KLERIPNGLC PRAGYDRNLQ RFNLQSNNTS 300 SQLTPEFSDI KNYSHTPSRI FIMEDKNGDF TGEASYDYRR KNMRPSKYRL NEVSANNIDI 360 PSSHQCSAPL SQRELYGAKI SKPAVKSRTK EHFPIEEIVK PKGTLKILKK IHKQNGFRQN 420 CNSILPEMLV TSDTQMTRKV HGEVFGSKWR *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MEDSDDMDCE RDNHFLEKSK RRLKTPAQVQ ALEKFYNEHK YPSESMKLQF AKQIGLSEKQ  60
VAGWFCHRRS KDKRLLQDEC YVNRKQNPSA VAIHDSTSGF GQESCNSTKQ VDRYFDGKEV  120
ESNRFHGKKN SAAVPEQRGK LSHVNVVDDQ SSGSSTTSYE RLLKQGVDED CMYTNIKNGT  180
KRGYMVEKRS SYLLDYVESP AVSMVKLKLG REYHEDGPPL ATDFDPLPPG AFDSPVRDAD  240
NEPYYVGDPI QPRSCSIDVI AGNNERYNKF KLERIPNGLC PRAGYDRNLQ RFNLQSNNTS  300
SQLTPEFSDI KNYSHTPSRI FIMEDKNGDF TGEASYDYRR KNMRPSKYRL NEVSANNIDI  360
PSSHQCSAPL SQRELYGAKI SKPAVKSRTK EHFPIEEIVK PKGTLKILKK IHKQNGFRQN  420
CNSILPEMLV TSDTQMTRKV HGEVFGSKWR *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	74	RRSKDKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-49	HB-other family protein