PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1838
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 268aa    MW: 30292.6 Da    PI: 7.8592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1838genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-091452148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+W++eEd +l++ +++ G+g         g++R++k+c++rw++yl
  evm.model.AsparagusV1_07.1838 14 KGPWSPEEDTKLKEFIEKNGTG---------GLKRCGKSCRLRWLNYL 52
                                   79********************.........889************97 PP
2Myb_DNA-binding38.42.9e-1259101246
                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    g ++++Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  evm.model.AsparagusV1_07.1838  59 GDFSEDEDRIICTLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 101
                                    689******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MGRAPCCDKS KVKKGPWSPE EDTKLKEFIE KNGTGGLKRC GKSCRLRWLN YLRPNIKHGD  60
FSEDEDRIIC TLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGI PASQRKSNQQ  120
IKQQQQQQQQ FVFSSSTNKN IANSSSLTSH HLFDAHDLSH QYQTEDQRSN LLVFGGQDQS  180
SSSSDGLEES GFENNYIYGG FDGMNNPLLC NQEPSWIDLG GNYGEIKHAI SLNDGYTSLL  240
QEPSSANISF KTQERDMYSH NFNIHWS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-65MYB family protein