PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.1859

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 419aa MW: 46389.9 Da PI: 7.3256

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.1859	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.2	7.9e-07	241	262	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r H evm.model.AsparagusV1_07.1859 241 FCQVCGKGFKRDANLRMHMRAH 262 6*******************99 PP
2	zf-C2H2	10.7	0.0016	347	370	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + evm.model.AsparagusV1_07.1859 347 YVCNRCNrKQFSVLSDLRTHEKHC 370 9*******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MNSGGGGSSD SSCFDSCQGF LQMYEGLEEY CISPLPLGAS INTCSASNLV SFSNNSNTSL 60 VHSLSVLREM VQQLQSLVPT MINTSPHHHH HHHHHDDQQS LDAPSTVSRA TSLIQDILAA 120 ASSLPYAFQQ FVVLSSSLQR NELDHHLHQA TYFNAEATIA DRNQLPNPLQ GCNSSEAEAV 180 VAAGGGGVIF AASTSNETLR YSGTCSYFKR KETTTEKNED DEDGLIVEMD PADLLAKYTH 240 FCQVCGKGFK RDANLRMHMR AHGDEFKTSE ALSNPINKLK NGRFDGELEI DELEGDELGG 300 GQEKSIKKYS CPQEGCRWNK KHTRFRPLKS VVCVKNHYKR SHCPKMYVCN RCNRKQFSVL 360 SDLRTHEKHC GDNLRWRCSC GTTFSRKDKL MGHLALFPTH SPAPAPNTTA RFIQAPHS*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MNSGGGGSSD SSCFDSCQGF LQMYEGLEEY CISPLPLGAS INTCSASNLV SFSNNSNTSL  60
VHSLSVLREM VQQLQSLVPT MINTSPHHHH HHHHHDDQQS LDAPSTVSRA TSLIQDILAA  120
ASSLPYAFQQ FVVLSSSLQR NELDHHLHQA TYFNAEATIA DRNQLPNPLQ GCNSSEAEAV  180
VAAGGGGVIF AASTSNETLR YSGTCSYFKR KETTTEKNED DEDGLIVEMD PADLLAKYTH  240
FCQVCGKGFK RDANLRMHMR AHGDEFKTSE ALSNPINKLK NGRFDGELEI DELEGDELGG  300
GQEKSIKKYS CPQEGCRWNK KHTRFRPLKS VVCVKNHYKR SHCPKMYVCN RCNRKQFSVL  360
SDLRTHEKHC GDNLRWRCSC GTTFSRKDKL MGHLALFPTH SPAPAPNTTA RFIQAPHS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	6e-87	C2H2 family protein