PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.1864

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

LBD

Protein Properties

Length: 229aa MW: 23895.3 Da PI: 8.5474

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.1864	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.2	8.5e-36	22	109	1	87
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C aCk+lrrkC++dC++apyf ++ +++fa +hk+FGasnv+kll+++p ++r +a+ +++yeA+ar+rdPvyG+v++ evm.model.AsparagusV1_07.1864 22 PCGACKFLRRKCVSDCIFAPYFRCDDgAARFASIHKVFGASNVSKLLSHVPAQDRCEAVVTIAYEAQARIRDPVYGCVAH 101 7*******************665559************************************************ PP DUF260 80 ilklqqql 87 il+lq+q+ evm.model.AsparagusV1_07.1864 102 ILALQHQV 109 ****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MANSAGTDSG SGSRSGSGSG SPCGACKFLR RKCVSDCIFA PYFRCDDGAA RFASIHKVFG 60 ASNVSKLLSH VPAQDRCEAV VTIAYEAQAR IRDPVYGCVA HILALQHQVL AIIQCSFLNA 120 VNCNVALRCV LASFDLTDVG VFLGCDSAST GDASQRSVSS WYGGISSDVC CRSMAGEQAA 180 SRALNMASGS HIQAGNLPCP RRARLVAALM GCQCKRRAAM RSSQLNPS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	2e-47	LBD family protein