PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.228
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family FAR1
Protein Properties Length: 592aa    MW: 66506.7 Da    PI: 9.7574
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.228genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.65.5e-201402062390
                          FAR1  23 krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                                   + ++ +t+rtfvCs+eg+re++k + ++ +++r+etr+gC+a+++++++ +g+++vt++e +HnH+la
  evm.model.AsparagusV1_07.228 140 TSKNIVTRRTFVCSREGFREKKKGA-REVKSPRPETRIGCQACMTIRLTPNGRYRVTEFEPNHNHQLA 206
                                   245669***************9999.99999***********************************97 PP
2FAR185.77.3e-27248335190
                          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                                   +fY+ YA ++GF+vr+++++ s  +  it+r fvCs+eg+re++k + ++ +++r+etrtgC a++ ++ + +gk++v+++
  evm.model.AsparagusV1_07.228 248 EFYSMYAGRIGFTVRRASMTLS-AESVITRRMFVCSREGFRENKKGS-KRVKKPRPETRTGCPACMIIRVMPNGKYHVSEF 326
                                   6*****************9999.6667****************9999.99******************************* PP

                          FAR1  82 eleHnHela 90 
                                   ++ HnH+la
  evm.model.AsparagusV1_07.228 327 VTRHNHQLA 335
                                   *******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    
MHSRDFVVQI PRLRPQSSLS LFRLSSDPQS PLLPSRRRAE NPNPLPLFQA SSSADALSPS  60
SSAERDPLSR RSAPTALGET ISPSISADAL SPSISAEPKP SRLNQRFDII GTASFGDAAR  120
VNNILHMQRD FNERSTLWTT SKNIVTRRTF VCSREGFREK KKGAREVKSP RPETRIGCQA  180
CMTIRLTPNG RYRVTEFEPN HNHQLATVST INMLRAKKMR RKARAVRADL VDDSVRTPEF  240
ETEDEAYEFY SMYAGRIGFT VRRASMTLSA ESVITRRMFV CSREGFRENK KGSKRVKKPR  300
PETRTGCPAC MIIRVMPNGK YHVSEFVTRH NHQLATPSSA DLIMSHSAET SALDDELGQV  360
DLLSDEKDRD NQDVNLLSDE NKLYPRPLKT MRSGDVGAIM HCGEVGTISE YKVTIEERIK  420
DHFVKFDSLD LTATCTCKMF DFIGIQCRHV LKVLDARNIK DLPPHYILKR WRKDAKTGGI  480
SSNCCIPIGD DPQSSLSKRY GNLCRIFSIA AARAAKTMDS CTFVENQSDL LIDQVEQVLR  540
TRALELPPLI TSSSDRPQNP IDNVIAGNFR YDKMNQTSFV AHSNGKLLVF Q*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-19FAR1 family protein