PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.2491

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 246aa MW: 27253.8 Da PI: 4.3169

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.2491	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.7e-05	194	232	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R++i ++ Lr+++P+ ++k + +++L +A+ Y+ksL evm.model.AsparagusV1_07.2491 194 RKKIQEKVGVLRRIIPSG---KGKGKDTMAVLDEAIGYLKSL 232 99*************7...5555788**********99 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MGEDFDPWQL RSFNCESNVG ASALDPKQST NPNYADPFGF FSPNPFSMQS SNPTGFTSDA 60 NRFMVFDRLG DETNPMYNNP FGSQFPYSYP SNAGTNVYNG NVNEEMHEED PEEIDALLYS 120 GSDNEQEYEE EEEEEEKTRE NLDGEEEEEE EEEVATSAVL HPSHPPSKRR RVDLSLADTA 180 SSTNCNSSAK KAKRKKIQEK VGVLRRIIPS GKGKGKDTMA VLDEAIGYLK SLRLKAKGLG 240 VGALK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	172	KRRRV
2	168	195	KRRRVDLSLADTASSTNCNSSAKKAKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.1	1e-08	bHLH family protein