PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.2518

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

YABBY

Protein Properties

Length: 120aa MW: 13102 Da PI: 8.89

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.2518	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	81.9	1.9e-25	2	119	2	134
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeen 81 d+++ e++Cyv+C++C+t+lav vP + l+ +vtv+CGhC sl +n + a l+++ + ++++ evm.model.AsparagusV1_07.2518 2 DLVTPQEHLCYVRCAYCSTVLAVGVPCKRLMDTVTVKCGHCNSLSYLNPRPAG-LVPSLNS------------SDHHNTG 68 778899**********************************99887766554.4444443............2223333 PP YABBY 82 lksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134 ++ +++ + v+s s+++++ +p++p v++PPek+ r Psaynrf+k evm.model.AsparagusV1_07.2518 69 FQGPCNDYRKGHPLVPS--SSTSSEDTSPKAPFVVKPPEKKHRLPSAYNRFMK 119 33333333333344444..2466778899999*****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence
MDLVTPQEHL CYVRCAYCST VLAVGVPCKR LMDTVTVKCG HCNSLSYLNP RPAGLVPSLN 60 SSDHHNTGFQ GPCNDYRKGH PLVPSSSTSS EDTSPKAPFV VKPPEKKHRL PSAYNRFMK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	4e-29	YABBY family protein