PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.2957
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C2H2
Protein Properties Length: 335aa    MW: 36678.8 Da    PI: 7.3524
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.2957genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-057293223
                                   EETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                   +C  Cg+ F ++  L  H+r+H
  evm.model.AsparagusV1_07.2957 72 QCRECGREFQSWKALFGHMRSH 93
                                   7********************9 PP
2zf-C2H212.10.00058202224123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                    y+C+ C+ksF++   L  H  +H
  evm.model.AsparagusV1_07.2957 202 YECTACNKSFNTYQALGGHRASH 224
                                    99***********9999999887 PP
3zf-C2H214.78.9e-05243265123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                    ++C +Cgk+Fs+   L  H r+H
  evm.model.AsparagusV1_07.2957 243 HQCLICGKVFSSGQALGGHKRSH 265
                                    79******************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MDQEKKHSCK LCNKNFPCGR SLGGHMRCHV PPSSRGLQGL GADAYGLREN PKKSWRVEDQ  60
SAMSFCDLGE KQCRECGREF QSWKALFGHM RSHSDKIGRA EEEEEEDDGE GSWGDGGSHI  120
EGSVKVPKKK RRSRPRRPSP SFEYSKEQKD AAIALVMLSK DVGHWGSGSV EFSDKSSAVS  180
EGHQDLGSDE LGFLRSKKLA KYECTACNKS FNTYQALGGH RASHKRMRDC FENGSTDQVV  240
GAHQCLICGK VFSSGQALGG HKRSHLITAS PSRVIHQEET AVTDSDLIDL NVSLMIDEDS  300
SKGSVSVADA DYRPWWAGTG SNLQHAAMAA VIEN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128132KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-24C2H2 family protein