PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.3130
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 265aa    MW: 29456.3 Da    PI: 6.6313
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.3130genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.7e-161760144
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                   kr e++  r+v fskR+ gi+ KA+EL +LC+a+vav++ s+ g
  evm.model.AsparagusV1_07.3130 17 KRLESEDARHVCFSKRKVGIFSKASELATLCGARVAVLLESPVG 60
                                   6889999*******************************999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MARKKKTTMG KQKIEIKRLE SEDARHVCFS KRKVGIFSKA SELATLCGAR VAVLLESPVG  60
WPHSFGSPNM GQVADQYLSG RNDYYLGLNE AQRLSKVQEL NKQCMEISAQ LDAAKKKKAH  120
FEEKLEKIVE VNEFARKCEH LEELSLAELV EMEKVLYELR ENIRFKIFRD MTMNQGATSS  180
TNVNANMMLN PFENGGNHGM MVNLFEHQTG LSENPFTMNF SDLGANQSGS STGQGNPADN  240
VSLNEPEPSQ PATNDTMGPG HGFY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333RKKKTTMGKQKIEIKRLESEDARHVCFSKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-22M-type_MADS family protein