PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.3133
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 131aa    MW: 14276.2 Da    PI: 9.6436
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.3133genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.53.4e-131765149
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                   kr e++  r v fsk ++ i+ KA+EL +L +aevav+++s+ gk y +
  evm.model.AsparagusV1_07.3133 17 KRLESEDARRVCFSKYKTDIFSKASELATLYGAEVAVLLYSPMGKPYLF 65
                                   6889999*************************************97765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MPSKKKITIK KQKIEMKRLE SEDARRVCFS KYKTDIFSKA SELATLYGAE VAVLLYSPMG  60
KPYLFDSSRM GRDMNEVHNG NRFTVADSSD LGANQPGPSG SQGNSVALVN PDKLEGNQHE  120
PSGTKPGGFY *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-11M-type_MADS family protein