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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | evm.model.AsparagusV1_07.3262 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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| Family | HSF | ||||||||
| Protein Properties | Length: 337aa MW: 38422.3 Da PI: 4.9665 | ||||||||
| Description | HSF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HSF_DNA-bind | 95.2 | 6.7e-30 | 38 | 118 | 12 | 101 |
TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
HSF_DNA-bind 12 deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
d+ +++++sws nsfvv+d+ f+ +vLpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F kg+k
evm.model.AsparagusV1_07.3262 38 DPVTDRIVSWSGGCNSFVVWDPCAFSMSVLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLKGQK 108
778999******9******************************************999.........************* PP
XXXXXXXXXX CS
HSF_DNA-bind 92 ellekikrkk 101
+ll++ikr++
evm.model.AsparagusV1_07.3262 109 HLLKTIKRRR 118
********97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 337 aa Download sequence |
MDSETAISVK EELIDSSAGP PAEGSGTTPR PLEAXXXDPV TDRIVSWSGG CNSFVVWDPC 60 AFSMSVLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLKGQKHL LKTIKRRRPP 120 PHPPSQNTSL TPYLEVGNFG LDGEIDRLKR DKNILMAELV KLRQEQQNTR THLKAMEERL 180 QGTEQKQQQM MAFLARAMRN PNFLQQLAQQ NDKRKELEEA ISKKRRRPIE HFPHCDVGGS 240 SGVQFKNEGE RLRGVYGGCE VPELESLALE MQGFRSEENK EQQEEVDVEL NDEFWEELLN 300 ENIGEEKGGA EFEERGDDDV NLLTEKLGYM SSTSPR* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 111 | 117 | LKTIKRR |
| 2 | 213 | 227 | KRKELEEAISKKRRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G22830.1 | 6e-98 | HSF family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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