PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.3363
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family YABBY
Protein Properties Length: 188aa    MW: 20719.5 Da    PI: 8.3023
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.3363genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY216.11.1e-6621592170
                          YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveee 80 
                                    + + ++e+vCyvqCnfCntil+v+vP   lf ++vtvrCGhC++llsvn+    q+ + ++   +++     ++++ + +
  evm.model.AsparagusV1_07.3363   2 SAQIAAEHVCYVQCNFCNTILVVNVPGMNLFnNIVTVRCGHCANLLSVNMGALLQAFPLQEF--QKF-----QNHQIA-S 73 
                                    567789********************98888369***********************99985..223.....233332.2 PP

                          YABBY  81 nlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                                    +++s +  ++s+ +s+s++ ++ ++++++    p i+PPekrqrvPsaynrfikeeiqrika nPdishreafsaaaknW
  evm.model.AsparagusV1_07.3363  74 QVSSGDCGSSSKCNSTSAMFMQAHDQQQML---P-IHPPEKRQRVPSAYNRFIKEEIQRIKAYNPDISHREAFSAAAKNW 149
                                    334444455555555666667777777777...3.89******************************************* PP

                          YABBY 161 ahfPkihfgl 170
                                    ahfP+i fgl
  evm.model.AsparagusV1_07.3363 150 AHFPHIQFGL 159
                                    ********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MSAQIAAEHV CYVQCNFCNT ILVVNVPGMN LFNNIVTVRC GHCANLLSVN MGALLQAFPL  60
QEFQKFQNHQ IASQVSSGDC GSSSKCNSTS AMFMQAHDQQ QMLPIHPPEK RQRVPSAYNR  120
FIKEEIQRIK AYNPDISHRE AFSAAAKNWA HFPHIQFGLG LNANNQSKLD ETIAAVHGGG  180
QKSQSLY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-62YABBY family protein