PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.3400
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 220aa    MW: 25128.3 Da    PI: 8.2082
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.3400genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF534.4e-171152344
                                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                   i+n+ +r  t+ kRrng++KK +ELS+LCd+ ++ i+++++ 
  evm.model.AsparagusV1_07.3400 11 ISNDAKRRATLKKRRNGLFKKVNELSTLCDVPACAIVYAPDE 52
                                   9*************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MARKKVTLAW ISNDAKRRAT LKKRRNGLFK KVNELSTLCD VPACAIVYAP DEAQPEVWPM  60
EPEAKRILEH LKAMPESEQR KKRVNQEGFA MQRMVKLEEQ IFKQQREIRE LEMKIVMHQC  120
TAGRKLVDLG IEDLGILERL VDDTLKDVHE RIVQVRNLNP NLNSNPDAII VREEKPIMMM  180
DGCHGGGGGY LDDVVMKKPC MGSYENMLAL MDASSFYPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVTLAWISNDAKRRATLKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-43M-type_MADS family protein