PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.3487

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 270aa MW: 29441.2 Da PI: 8.1229

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.3487	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	29	51	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C ++F+ +++L+ H+ H evm.model.AsparagusV1_07.3487 29 PCTECEEVFTKSESLEMHQAIqH 51 799****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MRFSGCYECH AVDVRSVSRR YPRPGTLCPC TECEEVFTKS ESLEMHQAIQ HAVSELGPED 60 SGRNIVEIIF KSSWQKIDNP ICSIERILKV HNTQRTISRF EDYRDSVKAR AQVHLQPSQP 120 KSKNPRCAAD GNELLRFHST SLSCSLGSDG STSLCLSSAN STPCSVCTII RYGFPRAQQN 180 VGPLGVRTTA SSGRAHDWGP QSESGPAGRR RAMLVCRVVA GRVKRSGADD VESSGPFDSV 240 SADGSLEELF VANSRAILPC FVVIYKALD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-95	C2H2 family protein