PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.3503
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 242aa    MW: 26847.8 Da    PI: 10.7113
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.3503genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-095273627
                                   -SGGGGTS--TTTTT-SS-SSS CS
                        zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                                   C  + + G+C+yG++C+FaHg+
  evm.model.AsparagusV1_07.3503 52 CWSWKELGQCRYGSKCQFAHGK 73
                                   77899***************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MVVRRMGVDW TGFCSDVEAE LLEGIISAGV SVFAARTSPE VAVRRGLQED MCWSWKELGQ  60
CRYGSKCQFA HGKEELRSDP RGPRSWKHKN EVARSVSSTK SSPSSGSSSA YGSKYYRYIS  120
LPSPNTPDPD LPTRTSLTKL AETAAASTIN PKSKLETAAP TQNPSLSPPL QSLSQFHRRH  180
YHRRLPSIGL RLKKKKSSLC AFSMGLALRA GCLSSRRYAL SWRFFFVLQL INKEKKKTSL  240
S*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-08C3H family protein