PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.352
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 360aa    MW: 41060.2 Da    PI: 5.4702
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.352genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0690113226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   k  lC f+ + G+C  G +CkF+H+
  evm.model.AsparagusV1_07.352  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                                   6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MPPKQQSKAD VAKKQKIVED KTFGLKNKNK SKNVQKYVQS LHQSVHPKPD SSKIAAKKKK  60
EEEKAKEKEL NDLFKVAVSQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DEGSMEDWDQ ETLEKVVAQK NAEYKQNKPT EIVCKYFLDA VEKKQYGWFW  180
VCPNGGKDCH YRHALPPGYV LKSQMKALLE EETEKITIEE EIENQRAKVT TTTPMTPELF  240
YQWKKKKMEE RDAGLAAKQA ERAKNDRMSG RELFMSDATL FVDDDDAEAY ERYKREAAPE  300
EQAKNEAGTG GPSTSSHMDK DFEEVLAEEE DDDELDIDEL NELEASLSKT SIQINEPGK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-160C3H family protein