PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.3527
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 258aa    MW: 28513.2 Da    PI: 8.2002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.3527genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.4e-181461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd  lv +++++G+g+Wk+++ + g+ R+ k+c++rw +yl
  evm.model.AsparagusV1_07.3527 14 KGPWTPEEDITLVSYIQEHGPGNWKSVPIKTGLLRCSKSCRLRWTNYL 61
                                   79******************************99************97 PP
2Myb_DNA-binding513.4e-1667112148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg++T +E++l++++ ++lG++ W++Ia +++  Rt++++k++w+++l
  evm.model.AsparagusV1_07.3527  67 RGNFTDQEEKLIIHLQALLGNR-WAAIATYLP-ERTDNDIKNYWNTHL 112
                                    89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MGRPPCCDKI GVKKGPWTPE EDITLVSYIQ EHGPGNWKSV PIKTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKLIIH LQALLGNRWA AIATYLPERT DNDIKNYWNT HLKKKLQKHE  120
ANNANKSKGQ WERRLQTDIN LAKQALQQAL SLDNTKPTNN SITIPSSSSS STYASSTENI  180
SKLLEGWMGS VKPSSVGLAN SESTESLVSE VSETESKPSL GDQVPLAILE NWLFDDSFVG  240
GSEGLFGLSI ENGCGMY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.22e-86MYB family protein