PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.3611
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family BBR-BPC
Protein Properties Length: 280aa    MW: 31220.7 Da    PI: 10.3895
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.3611genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind321.42.7e-9812791301
                      GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdakirernlalsekkaavaerd..maflqrdkalaernkalve 76 
                                    mdddg  + rn++y+++   lk  lglqlms +a +rd+k+  +n  + +++  vae    m+f  rd+++++       
  evm.model.AsparagusV1_07.3611   1 MDDDGGLNmRNWSYFDQP--LKGSLGLQLMSNVAqDRDTKPLLSNGGFLHRDCGVAEPSvpMDF-IRDSWIHH-----NR 72 
                                    999999999********9..*************99******99999999999988887667***.9******9.....34 PP

                      GAGA_bind  77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqra 156
                                     +nk+l++l++++       ++ +++++t+  +++q      l+++  +  +ee   + p +++ +++ ++++kkkr+++
  evm.model.AsparagusV1_07.3611  73 DHNKILHVLPMNHH------QSFNMIPDTSASQTIQI-----LQPPNPP--KEE---KIPQVDNFNNHIDTPSKKKRSQG 136
                                    45899999998885......56899********9999.....6666555..333...33444455666666666778888 PP

                      GAGA_bind 157 kkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236
                                    +  k++k+kk+kk +++ +++ ++ s   ++ + kks+ lv+ng++lD s++P+PvCsCtG ++qCY+WG GGWqSaCCt
  evm.model.AsparagusV1_07.3611 137 RPIKSPKQKKPKKVNNHGRDDADNVS--ISKGKIKKSTALVINGIDLDLSGIPPPVCSCTGNPQQCYRWGFGGWQSACCT 214
                                    88888888888887666655554444..34567799******************************************** PP

                      GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                    ++iS+yPLP+s+krrgaRiagrKmSqgafkk+LekLa+eG++lsnp+DL+++WAkHGtnkfvtir
  evm.model.AsparagusV1_07.3611 215 MNISMYPLPMSAKRRGARIAGRKMSQGAFKKVLEKLAGEGHNLSNPIDLRTFWAKHGTNKFVTIR 279
                                    ****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MDDDGGLNMR NWSYFDQPLK GSLGLQLMSN VAQDRDTKPL LSNGGFLHRD CGVAEPSVPM  60
DFIRDSWIHH NRDHNKILHV LPMNHHQSFN MIPDTSASQT IQILQPPNPP KEEKIPQVDN  120
FNNHIDTPSK KKRSQGRPIK SPKQKKPKKV NNHGRDDADN VSISKGKIKK STALVINGID  180
LDLSGIPPPV CSCTGNPQQC YRWGFGGWQS ACCTMNISMY PLPMSAKRRG ARIAGRKMSQ  240
GAFKKVLEKL AGEGHNLSNP IDLRTFWAKH GTNKFVTIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130149KKKRSQGRPIKSPKQKKPKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.13e-71BBR-BPC family protein