PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.3690

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 906aa MW: 103844 Da PI: 9.7512

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.3690	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	883	904	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + lCr++++ G C yG++Ck+ H evm.model.AsparagusV1_07.3690 883 RQLCRYYHQ-GSCFYGESCKYLH 904 679****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence
MGCYHSITGI NPKSVERERA RNELVEREEE GRYRKMVMGL SLILSIFRKK GWLKRRKRRE 60 EEVDGGVENK SLLLAKDGGE RGESEDEPQS VHSSFRFSFG SQAEAEEVGV GPGVVAEGAA 120 VVLLVNLEDE GVETGKGEGD EEGEVELRER QKWRRLESLE KSITPVAGLL VRFSYSQIRA 180 ATRNFSRGRE LGRGALSRVY RGRIGVGRST VAIKKVEGQD RESAKAFCRE LMIASSLHHP 240 NIAPLLGFCV DQQGLFLVYK YVSGGSLDRH LHPDDKRRKV LPWEVRYKVA LGVAQAIGYL 300 HFDTDKCVVH RDIKPSNILL SSDKSAKLCD FGLATWTHGP SLPFLCKAVK GTFGYLAPEY 360 FQHGKLSDKT DVYAFGVLLL ELITGRKAID RSRPQGDENL VLWAKPYLRQ GERAMEKFID 420 PNLKPGSYGW GEMTRMARAA SACLRSEEST RPSIDQVIKM LQAEEEFSCS TDWSVFSGNH 480 SCLFSGPLSS QFYGQAQEKS DIMRDGHLEK LKLEQCKVYL RKYGLRLTGT KGILIDRIKE 540 HLEVINGGGE MKYPRSSFVL NCKGDACTGD IVMFEQNVYE MFSIASRSAT GPPCGTRVVI 600 GRIVKESYGA AKQQHTFTIE VLWSTGEKPL PPLHPLLIKG RNLYRLKTMR QRWADEEERR 660 KVLQEKHSRG FVARCSRETR IKEKEMRKTG LIKRKESKTA KQSENSAQAK VEQHHHQDEE 720 NNGILQQNIQ RNQQFNHQQM NKHPINPIVK QNIQHNQQFN HQQMNKHQIN PILQWNIQHN 780 QQFNHQQMNK HPAKNVVQIR NIQHQQQVQH LQKENFTKPQ DRPMNAEPLK YQFHDNRCQS 840 HFNNNHGRYQ LHHTSAHHEV HYRQPIAGSN YNLPRQQNWA QPRQLCRYYH QGSCFYGESC 900 KYLHQ*

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence

MGCYHSITGI NPKSVERERA RNELVEREEE GRYRKMVMGL SLILSIFRKK GWLKRRKRRE  60
EEVDGGVENK SLLLAKDGGE RGESEDEPQS VHSSFRFSFG SQAEAEEVGV GPGVVAEGAA  120
VVLLVNLEDE GVETGKGEGD EEGEVELRER QKWRRLESLE KSITPVAGLL VRFSYSQIRA  180
ATRNFSRGRE LGRGALSRVY RGRIGVGRST VAIKKVEGQD RESAKAFCRE LMIASSLHHP  240
NIAPLLGFCV DQQGLFLVYK YVSGGSLDRH LHPDDKRRKV LPWEVRYKVA LGVAQAIGYL  300
HFDTDKCVVH RDIKPSNILL SSDKSAKLCD FGLATWTHGP SLPFLCKAVK GTFGYLAPEY  360
FQHGKLSDKT DVYAFGVLLL ELITGRKAID RSRPQGDENL VLWAKPYLRQ GERAMEKFID  420
PNLKPGSYGW GEMTRMARAA SACLRSEEST RPSIDQVIKM LQAEEEFSCS TDWSVFSGNH  480
SCLFSGPLSS QFYGQAQEKS DIMRDGHLEK LKLEQCKVYL RKYGLRLTGT KGILIDRIKE  540
HLEVINGGGE MKYPRSSFVL NCKGDACTGD IVMFEQNVYE MFSIASRSAT GPPCGTRVVI  600
GRIVKESYGA AKQQHTFTIE VLWSTGEKPL PPLHPLLIKG RNLYRLKTMR QRWADEEERR  660
KVLQEKHSRG FVARCSRETR IKEKEMRKTG LIKRKESKTA KQSENSAQAK VEQHHHQDEE  720
NNGILQQNIQ RNQQFNHQQM NKHPINPIVK QNIQHNQQFN HQQMNKHQIN PILQWNIQHN  780
QQFNHQQMNK HPAKNVVQIR NIQHQQQVQH LQKENFTKPQ DRPMNAEPLK YQFHDNRCQS  840
HFNNNHGRYQ LHHTSAHHEV HYRQPIAGSN YNLPRQQNWA QPRQLCRYYH QGSCFYGESC  900
KYLHQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	59	LKRRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.2	2e-14	WRKY family protein