PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.3725

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 285aa MW: 31034 Da PI: 8.2152

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.3725	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.2e-05	256	278	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F ++ +L+ H + H evm.model.AsparagusV1_07.3725 256 VCPKCSRAFQDPVLLVEHVEKdH 278 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MGTPEFPDLG KHCSVGDCKL NDFLPFTCDR CQKVFCLQHR RYGTHQCPNA NDEDITVLKC 60 PLCAKGVRLV PNQDPNITWD VHVNTDCDPS NYQRATEKKK CPVPGCREPL TISNKIQCRD 120 CIQDHCLKHR FGPDHKCPGP KKPDSGFPFI GLLKRNQTVQ PNSGSSSGGS SWWSSSLINA 180 ASSVRASAES GIQRLSTTTN QALCKAKDGM SQSSSGGGPE QCPQCPSKFS SVTALIEHVE 240 KSHNKGGQQQ RVTVDVCPKC SRAFQDPVLL VEHVEKDHTG TSKA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-114	C2H2 family protein