PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.3740

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

NF-YC

Protein Properties

Length: 251aa MW: 27906.5 Da PI: 5.6872

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.3740	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.5	1.5e-18	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v+ fdfl d+v + evm.model.AsparagusV1_07.3740 7 TRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTVNCMHLKQCVKMYSSFDFLSDVVNK 86 579**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MRKKLGTRFP ASRIKKIMQA DEDVGKIALA VPLLVSKALE LFLQDLCDRT YEVTLQRGAK 60 TVNCMHLKQC VKMYSSFDFL SDVVNKVPNL GGAESCGDEK GISRRRKTLP NDGDTVADEE 120 IRSPKMAMRG AHFSASPRGR GRGRGRGRGR PPSIRTMEMH KEHADAYMKF EDDNDMSPDH 180 GEPHSKDIGG IEKENVAENA NPPEIVEETK REESAAWPLP DEAAKMGIAP LNVVNLNMHI 240 DEDEDYDNED *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	108	SRRRKT
2	138	147	RGRGRGRGRG
3	138	148	RGRGRGRGRGR
4	140	149	RGRGRGRGRG
5	140	150	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-52	NF-YC family protein