PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.555
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 222aa    MW: 24925.1 Da    PI: 8.488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.555genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.3e-07178202730
                                   HHHHHHHHHHHHHHHHHHCTSCC.C CS
                           HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                                   + ErrRR+++N+++  Lr+++Pk +
  evm.model.AsparagusV1_07.555 178 MSERRRRKKLNDRLYMLRSVVPKiS 202
                                   68********************944 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MSITYPSLSS LSSQLVSNVA VLNLFTVVTK RRNIKRMNSN WYLTEPLQNH QESFSSLLST  60
NPFGLDPFGL TAPLSFTDLN PTAQFQTTHL HETGFQAFET PKFVSGSKIL RPAEANPSIG  120
AQPTLIGEEN EEEGVEDGSF DGSGLNCEFE ENVKSLENNE SHESRRKRNR AAPAKNLMSE  180
RRRRKKLNDR LYMLRSVVPK ISKVRDAVLN SLCFRCWDLS L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165186RRKRNRAAPAKNLMSERRRRKK
2166186RKRNRAAPAKNLMSERRRRKK
3166187RRKRNRAAPAKNLMSERRRRKK
4180187ERRRRKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.17e-14bHLH family protein