PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.578
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 373aa    MW: 42268.5 Da    PI: 5.9729
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.578genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS117.31.9e-36373722374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                   ++lL +  e +++g + laq +L+rl++ asp g++m+Rl +y+       ++r      +  ++++ +e+ ++++ +a++
  evm.model.AsparagusV1_07.578  37 RHLLKAYGESIEKGYMDLAQVILTRLRDKASPIGTTMERLSHYLS------VQR------SDPQAQRLKEECMKNHSMAFR 105
                                   78999999***********************************64......555......334566666667999****** PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162
                                   +++e++P+ +f+h++aN aI+e++ ++ e+v i+Dfdi+ G+QWp+L+ aL  R     s+R T ++++e  +  + e+++
  evm.model.AsparagusV1_07.578 106 ALYEITPYGRFAHFVANYAIYESIPRDiEEVRIVDFDIGDGIQWPPLICALGPR----RSVRFTCINDAE--KDYKFERVR 180
                                   *************************999***********************877....689*******66..88999**** PP

                          GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                                   erLa+fA+++g+++       ++l   el ++  ++g  l+ n+++ l ++    +     r++v k++ + +  +v  + 
  evm.model.AsparagusV1_07.578 181 ERLASFAQSMGLNLIV-----DNLRLDELMRIGASEGVWLVFNCMVGLPHMN---MGR---RSQVEKFIEGARNSLVSSST 250
                                   ************9755.....5566666799*****************9998...333...33444555555555555555 PP

                          GRAS 244 qeadh..nsesFlerfl..ealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerl 319
                                    +  +  ++++  ++++  e l +  al++s+e  +p+    +r+++E  ++g+ +++++   +                 
  evm.model.AsparagusV1_07.578 251 TNGMLicGNGRCGHELFsnEHLLHSQALLESMEWHFPSSFsLARTSMECLFIGPCVSSCLGEHELV--------------S 317
                                   5533333333333333212789999***********988559************999887654443..............1 PP

                          GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                                     + ++  ++s+++ ++a  ++r  +  g +v  e  +++vl W++ pLv v+aWr
  evm.model.AsparagusV1_07.578 318 VGSSLEGCRFSKQNLMEAMEIVRGGD-YGVKVRgEWGNEMVLEWRGTPLVRVCAWR 372
                                   23447778889999999999999887.778888566999****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MLSPTDISCD FFDVFPTNSC EHASMINMEF DQELSIRHLL KAYGESIEKG YMDLAQVILT  60
RLRDKASPIG TTMERLSHYL SVQRSDPQAQ RLKEECMKNH SMAFRALYEI TPYGRFAHFV  120
ANYAIYESIP RDIEEVRIVD FDIGDGIQWP PLICALGPRR SVRFTCINDA EKDYKFERVR  180
ERLASFAQSM GLNLIVDNLR LDELMRIGAS EGVWLVFNCM VGLPHMNMGR RSQVEKFIEG  240
ARNSLVSSST TNGMLICGNG RCGHELFSNE HLLHSQALLE SMEWHFPSSF SLARTSMECL  300
FIGPCVSSCL GEHELVSVGS SLEGCRFSKQ NLMEAMEIVR GGDYGVKVRG EWGNEMVLEW  360
RGTPLVRVCA WR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-20GRAS family protein