PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.596

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

LBD

Protein Properties

Length: 167aa MW: 18529.2 Da PI: 7.0833

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.596	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.2	1.6e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +Ca+Ck+lrr+CakdC++ap fp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ evm.model.AsparagusV1_07.596 6 PCASCKLLRRRCAKDCIFAPFFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARMRDPVYGCVGAIS 86 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq+q++ql+ +la++++e evm.model.AsparagusV1_07.596 87 FLQNQVSQLQMQLAVAQAE 105 *************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence
MGGTSPCASC KLLRRRCAKD CIFAPFFPSD DPHKFAIVHK VFGASNVSKM LQELPVHQRA 60 DAVSSLVYEA NARMRDPVYG CVGAISFLQN QVSQLQMQLA VAQAEILCIQ MQQDPPLSTH 120 DHQQMLEPDD KFLMHNNNLG SVPQFINFPS SSNVAQEPLK RESLWT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-81	LBD family protein