PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.806
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 275aa    MW: 30625.1 Da    PI: 8.4968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.806genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-1757102147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg W + Ed +l ++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  evm.model.AsparagusV1_07.806  57 RGHWRPAEDAKLRELVAQHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 102
                                   899*****************************.***********996 PP
2Myb_DNA-binding56.94.8e-18109152146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   r+++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  evm.model.AsparagusV1_07.806 109 RKAFSEEEEEKLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHV 152
                                   789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MGFFPLCPPP FSGDLSSSME ILKGDQGHYG NEKSHKSGDQ ERSRDHESVL QSKLCARGHW  60
RPAEDAKLRE LVAQHGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINRK AFSEEEEEKL  120
LAAHRAYGNK WALIARLFPG RTDNAVKNHW HVIMARKQRE QGSACRRRKP SPPNNSSGSN  180
SQTLIPKCVQ LNISNNSNSG DSTITSNRDF PFDLFMGSQE KVVAANNGGL FEKTADSDSN  240
SEASAAESVA FNHIEYEREK ISLPFIDFLG VGAT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-69MYB family protein