PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.808
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 185aa    MW: 20054.8 Da    PI: 5.7063
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.808genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.1e-08103123526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C +f r G+Ck G++C+F Hg
  evm.model.AsparagusV1_07.808 103 PCLYFNR-GFCKNGSSCSFLHG 123
                                   8******.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MDAYEATRIV FSRIQALDPE NAAKIMGLLL IQDHGDKEMI RLAFGPETLL HSLILKARKE  60
LGLGPNNPSS WAQQPLDDDE LLLQAAAATP ESLYYDQGFG WKPCLYFNRG FCKNGSSCSF  120
LHGAADDMSR RCVGGGGAAV PRDNADEVQK SAPRCIWQRR GGGVSLLSDE LLVGQVLQLY  180
ASAK*