PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.1010
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 317aa    MW: 35289 Da    PI: 6.3494
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.1010genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-142572148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g W++eEd++l  +    G g+W+ +ar  g+ R++k+c++rw +yl
  evm.model.AsparagusV1_08.1010 25 KGLWSPEEDDKLMAYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 72
                                   678*******************************************97 PP
2Myb_DNA-binding52.51.1e-1678121146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    rg+++++E+el+++++  lG++ W+ Ia++++ gRt++++k++w++
  evm.model.AsparagusV1_08.1010  78 RGAFSQQEEELIIQLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 121
                                    89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MRKPDPPTSK TTNNGNVDGA NKLRKGLWSP EEDDKLMAYM LTNGQGCWSD VARNAGLQRC  60
GKSCRLRWIN YLRPDLKRGA FSQQEEELII QLHSILGNRW SQIAARLPGR TDNEIKNFWN  120
STIKKRLKNS SSPPSNKDNS SEPKETGEGY MNSNEYDMTM RMGSSSSSSS SMHAFSMNNS  180
KYDLFPLPDN PYGVSELGSS GYFHVPTSLT HVSFGSHEFY ASSHNHGHAI IHEGSLMGGD  240
LFVPPLECTS LEEKFQVNNH TMKNNKNNIN DINKNVISGN GGDGGENYWG SERGAWDLGD  300
LMEDVSSFPF LDFQVE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-69MYB family protein