PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.1077
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 541aa    MW: 59795.8 Da    PI: 5.7606
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.1077genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS460.59.9e-1411705401374
                           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                    l+++L+ cA+av+++d +la++l+a+l+ ++s +gdp qRl ay++e+L arla+s+s +ykal+++e +   ss+ l++
  evm.model.AsparagusV1_08.1077 170 LKRALMVCAQAVAENDISLAEWLIAQLRPMVSVSGDPGQRLGAYMLEGLVARLASSGSLIYKALRCKEPA---SSDLLSY 246
                                    5789*****************************************************************9...9****** PP

                           GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeel 158
                                    ++l++e++P++kf++l aN aI ea++ge+rvHiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg++++ s   +   l
  evm.model.AsparagusV1_08.1077 247 MHLLYEACPYFKFGYLSANGAIAEAFKGEDRVHIIDFQIAQGTQWVTLLQALAKRPRGPPHVRITGIDDSVSAyaRGGGL 326
                                    *********************************************************************888899999** PP

                           GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                                    + +g+rL++fA++l+vp+ef++ ++ +  ++++ +L ++pgEalaVn+++qlh+l+desvs++++rd+vL+lvkslsP+v
  evm.model.AsparagusV1_08.1077 327 HIVGQRLSHFAKSLNVPLEFHP-AVLSAGEVQPPDLWIQPGEALAVNFAFQLHHLPDESVSTTNQRDRVLRLVKSLSPRV 405
                                    **********************.8999***************************************************** PP

                           GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                                    v++veqe+++n+++F+ rf+e+l+yy+a+f+s+++ lpre++eri+vE+++l+r+ivn++acegaer+erhe l+kW++r
  evm.model.AsparagusV1_08.1077 406 VTLVEQESNTNTAPFFPRFVETLDYYTAIFESIDVALPRENKERINVEQHCLARDIVNIIACEGAERIERHELLGKWKAR 485
                                    ******************************************************************************** PP

                           GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                    +++aGF+pvpls  +++++k ll++++++ +rvee++g+l+lgW++r+Lv+ +aWr
  evm.model.AsparagusV1_08.1077 486 FTMAGFTPVPLSPLVNATIKGLLENYPEK-FRVEERDGALYLGWMNRALVVSCAWR 540
                                    ***************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    
MPGPEISYPT SYTSMQASKQ YNNQLNSMPI RESTSQIIPQ NFQPLAAPLC SGNGSQTKHT  60
SSQTNQLQYC TLDSSLTYNS PSTVSISPTS GSPISHQDYQ SDNTYGSPPS VSCITDDPND  120
LQNKLRELEN AILCTEMENP VDSIQSALQS HLSLDTENWM QIMGIPQGDL KRALMVCAQA  180
VAENDISLAE WLIAQLRPMV SVSGDPGQRL GAYMLEGLVA RLASSGSLIY KALRCKEPAS  240
SDLLSYMHLL YEACPYFKFG YLSANGAIAE AFKGEDRVHI IDFQIAQGTQ WVTLLQALAK  300
RPRGPPHVRI TGIDDSVSAY ARGGGLHIVG QRLSHFAKSL NVPLEFHPAV LSAGEVQPPD  360
LWIQPGEALA VNFAFQLHHL PDESVSTTNQ RDRVLRLVKS LSPRVVTLVE QESNTNTAPF  420
FPRFVETLDY YTAIFESIDV ALPRENKERI NVEQHCLARD IVNIIACEGA ERIERHELLG  480
KWKARFTMAG FTPVPLSPLV NATIKGLLEN YPEKFRVEER DGALYLGWMN RALVVSCAWR  540
*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein