PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.1167

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 23963.1 Da PI: 8.1702

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.1167	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	51	105	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eql+ Le F ++r++ ++ +LA+klgL+ +qV vWFqNrRa++k+ evm.model.AsparagusV1_08.1167 51 KKRRLSDEQLRFLEINFGEERKLESGRKMQLASKLGLDPKQVAVWFQNRRARWKN 105 66789************************************************95 PP
2	HD-ZIP_I/II	118	5.1e-38	51	142	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 kkrrls+eq+++LE +F ee+kLe+ rK++la++Lgl+p+qvavWFqnrRAR+k+kq+E++y +Lk+++d+++ e+++Le evm.model.AsparagusV1_08.1167 51 KKRRLSDEQLRFLEINFGEERKLESGRKMQLASKLGLDPKQVAVWFQNRRARWKNKQMEEEYLKLKTKLDSVVVEKCHLE 130 9***************************************************************************** PP HD-ZIP_I/II 82 keveeLreelke 93 +ev +L+e+l+e evm.model.AsparagusV1_08.1167 131 NEVLSLKERLSE 142 *****99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MIKQVLEEKM LFSSAPSSEL YTSIPQGDQR RTRRRRRRAK VDSDGLSAES KKRRLSDEQL 60 RFLEINFGEE RKLESGRKMQ LASKLGLDPK QVAVWFQNRR ARWKNKQMEE EYLKLKTKLD 120 SVVVEKCHLE NEVLSLKERL SEAEEKIKRL SKGGDGGADD GGSPSSSSTE TYQPPPPPPA 180 ALGEFGEMGD ELLYINEDNC VIDYGYLFGM *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	37	RRTRRRRR
2	30	38	RRTRRRRRR
3	33	38	RRRRRR
4	33	54	RRRRRRAKVDSDGLSAESKKRR
5	34	55	RRRRRRAKVDSDGLSAESKKRR
6	35	56	RRRRRRAKVDSDGLSAESKKRR
7	36	57	RRRRRRAKVDSDGLSAESKKRR
8	99	107	RRARWKNKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-44	HD-ZIP family protein