PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.1256
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 230aa    MW: 25581.7 Da    PI: 5.9447
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.1256genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS31.62.1e-101245110143
                           GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegppslR 143
                                      +H++D++ ++++Q p+L++aLasRpegpp ++
  evm.model.AsparagusV1_08.1256  12 PLLHVVDLSTTHCMQMPTLIDALASRPEGPPYIK 45 
                                    678****************************887 PP
2GRAS66.16.9e-21106227192303
                           GRAS 192 eeLrvkp........gEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                                    e+L++++         Eal+Vn++++ h+++d++++++s   +r+ + k +++l+P ++++v++++d+++++ ++r+  a
  evm.model.AsparagusV1_08.1256 106 EQLKLQKvvgpppdiSEALVVNCHMMPHYIPDDEACSPSglsPRSMFFKNLRELEPMLLTLVDEDVDLTANDVVTRLGAA 185
                                    3343333333447789*********************999999************************************* PP

                           GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacega 303
                                    ++y +  +d++++ lpr se r+++E e +g++i+nv+  eg 
  evm.model.AsparagusV1_08.1256 186 FNYLWIPYDAVDTFLPRGSERRRWYESE-IGWKIENVIGYEGL 227
                                    ****************************.*********99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MLPSWTPSEN FPLLHVVDLS TTHCMQMPTL IDALASRPEG PPYIKAHRSP ALIGSGLVHL  60
PSAAAGLLLM KMSRRSPLLL RSITKYRDGV RVIPSTPADG FETLMEQLKL QKVVGPPPDI  120
SEALVVNCHM MPHYIPDDEA CSPSGLSPRS MFFKNLRELE PMLLTLVDED VDLTANDVVT  180
RLGAAFNYLW IPYDAVDTFL PRGSERRRWY ESEIGWKIEN VIGYEGLGR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.15e-49GRAS family protein