PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.14

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 555aa MW: 58244 Da PI: 6.9098

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.14	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	7e-07	535	554	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+r G+Ck G++C+++H+ evm.model.AsparagusV1_08.14 535 CN-FHRHGYCKKGASCNYIHS 554 66.*****************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MDGSVRENTI LQAVASSPAT DNYNLVNSDK WTAHPSSLSV TNTGMASNHM DGRPAASSTG 60 CESSKIYNAW PDQSQACNAP RPINPSSRNL SQQTSFHGRD GRGENTGRWS RDRSWQNNWN 120 SNRHRRFQPN DRAYERQHPY QSSSRQQYRG EQWKGQPAND SSKQLGNGSF NPPANAPQPS 180 NIDWASLQGA LNRISASVQP ACSGLGSDLQ QSPANVTSST LNSVGGWASS AIPCVNLAKT 240 PENIGVLSDF QQQNKLTESA VATSASHAVY CGSNATESMD RSNRRQGLES SSSNTKPHSE 300 QASVDVLNSE SIQPANPQND TDDHTIPMNE LDANMKCPGA HDRSNPENKP VNNTVVGPAS 360 VAPNALGSSN LSDASVAVEK LEASSSSAPS SAHQQGSNSL STNAAQPVNI GWGMAQQNSN 420 PGTGTGQETG HLVHAAIPGA ANMGWGMVTP GLAMANPNAG WGMPMQVNPA AVNPGWFAPV 480 IGGANPSPSW VAPTEGNTNQ NAAWGTPVQG TGQGSMNGGA SNQNGGGEGE QRGICNFHRH 540 GYCKKGASCN YIHS*

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MDGSVRENTI LQAVASSPAT DNYNLVNSDK WTAHPSSLSV TNTGMASNHM DGRPAASSTG  60
CESSKIYNAW PDQSQACNAP RPINPSSRNL SQQTSFHGRD GRGENTGRWS RDRSWQNNWN  120
SNRHRRFQPN DRAYERQHPY QSSSRQQYRG EQWKGQPAND SSKQLGNGSF NPPANAPQPS  180
NIDWASLQGA LNRISASVQP ACSGLGSDLQ QSPANVTSST LNSVGGWASS AIPCVNLAKT  240
PENIGVLSDF QQQNKLTESA VATSASHAVY CGSNATESMD RSNRRQGLES SSSNTKPHSE  300
QASVDVLNSE SIQPANPQND TDDHTIPMNE LDANMKCPGA HDRSNPENKP VNNTVVGPAS  360
VAPNALGSSN LSDASVAVEK LEASSSSAPS SAHQQGSNSL STNAAQPVNI GWGMAQQNSN  420
PGTGTGQETG HLVHAAIPGA ANMGWGMVTP GLAMANPNAG WGMPMQVNPA AVNPGWFAPV  480
IGGANPSPSW VAPTEGNTNQ NAAWGTPVQG TGQGSMNGGA SNQNGGGEGE QRGICNFHRH  540
GYCKKGASCN YIHS*