PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.159

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

LSD

Protein Properties

Length: 144aa MW: 14998.5 Da PI: 7.9297

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.159	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.6	4.8e-14	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+ V+Ca+C++V evm.model.AsparagusV1_08.159 27 CSGCRNLLMYPLGATTVCCAVCNAV 51 ************************9 PP
2	zf-LSD1	46.8	4.8e-15	66	90	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV evm.model.AsparagusV1_08.159 66 CGGCHTLLMYIRGATSVQCSCCHTV 90 ************************9 PP
3	zf-LSD1	41.8	1.7e-13	104	128	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V evm.model.AsparagusV1_08.159 104 CGSCRMLLMYQYGARSVKCAVCNFV 128 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence
MPVPLAPYPT PPAPFTPSNG GHSQLVCSGC RNLLMYPLGA TTVCCAVCNA VTPVPPPGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAHEGNQVA HVNCGSCRML LMYQYGARSV 120 KCAVCNFVTP VTASPANEQK LNN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	2e-73	LSD family protein