PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.1647

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 202aa MW: 22901.1 Da PI: 7.8504

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.1647	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H evm.model.AsparagusV1_08.1647 102 YKCKTCDKTFNSYQALGGHRTSH 124 9***********99999998877 PP
2	zf-C2H2	14.2	0.00012	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F++ L H r+H evm.model.AsparagusV1_08.1647 146 HECSFCGKVFPSGQALGGHKRSH 168 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MDDKAFTNVD SAGQSESDIE ASTSSRNRSR PKRMEENCDD KEKEDGAMIL VMLSRNSFEE 60 YSDELKKRNV SYGVSELGRG RRFPRFDDED YNAIDSDKRR RYKCKTCDKT FNSYQALGGH 120 RTSHNLDRNL GVKTVKKPKK GSKDHHECSF CGKVFPSGQA LGGHKRSHWN SNSIDAHLND 180 CNDEDYGNMN GNSEPSRFLL I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	102	DKRRRY
2	98	140	KRRRYKCKTCDKTFNSYQALGGHRTSHNLDRNLGVKTVKKPKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	8e-20	C2H2 family protein