PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.1856
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 243aa    MW: 25569.2 Da    PI: 10.562
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.1856genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-1260105555
                                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  evm.model.AsparagusV1_08.1856  60 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 105
                                    99***********************8.....6******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
RGWFVQRFLW IDAAGCGESA AAAAFSSGSA AEFWGGAGFG XXXXXXQRVR ARRGQATDPH  60
SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA  120
AVAPLVADIS SENRERGLTA TAAERPQQTT ANGNGAAKVE ANGARTWGGR CSTSQGKASA  180
LMPYLPAPHH PRARCHPGVS SSPPSSEHPT AALSSASSSP TCRVDGSSLP PSGVAYTTAR  240
TR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16570RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-23bHLH family protein