PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.1971

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

NF-YB

Protein Properties

Length: 204aa MW: 20738.7 Da PI: 5.835

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.1971	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	186.2	2.4e-58	23	118	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyve 81 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yve evm.model.AsparagusV1_08.1971 23 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVE 102 89**************************************************************************** PP NF-YB 82 plkvylkkyrelegek 97 plkvyl+kyrelegek evm.model.AsparagusV1_08.1971 103 PLKVYLQKYRELEGEK 118 ************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MADSDNESGG HNAGGNSDFS SPREQDRFLP IANVSRIMKK ALPANAKISK DAKETVQECV 60 SEFISFITGE ASDKCQREKR KTINGDDLLW AMTTLGFEEY VEPLKVYLQK YRELEGEKGS 120 NAAGSSSSQS KEGGGGVVNM GNNGGGYGGG GGRDGGGGGG MMMMGQQMYQ HQGSFGSGGG 180 GGGGGGGGNS SSSSGGIGRQ GRV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	159	GGGGRDGGGGG
2	150	160	GGGGRDGGGGG
3	151	161	GGGGRDGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-74	NF-YB family protein