PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.2427
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 247aa    MW: 28308.6 Da    PI: 11.1947
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.2427genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-171461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd +lv +++++G+g+W+ I+   g+ R+ k+c++rw +yl
  evm.model.AsparagusV1_08.2427 14 KGPWTPEEDIILVSYIREHGPGNWRVIPTNTGLMRCSKSCRLRWTNYL 61
                                   79********************************************97 PP
2Myb_DNA-binding51.72e-1667112148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg++T++E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  evm.model.AsparagusV1_08.2427  67 RGNFTAQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                                    89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MGSPPCGNKV GVKKGPWTPE EDIILVSYIR EHGPGNWRVI PTNTGLMRCS KSCRLRWTNY  60
LKPGIKRGNF TAQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKHE  120
STRHDNNSSN HQQKNSKGLW ESRLQTDIQK AKQALHAALS LHKPEPTIEL KPTTDSLLNS  180
VSTSSMTTYA SSTVNISSTP PAIRWTWWPF LILRRRRCRK RSRGAQSRGR CNWSCLRLGC  240
LMRRRT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.29e-85MYB family protein