PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.2490
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family NF-YC
Protein Properties Length: 212aa    MW: 24070.7 Da    PI: 4.6957
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.2490genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC136.19.8e-43491521101
                          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkks 77 
                                    ql++fw+kq   ie+ ++fkn +lPlarikki+kad dv+mi++e+Pv++++a e+filelt+r+w+ a   krrt+ ++
  evm.model.AsparagusV1_08.2490  49 QLHAFWTKQmveIEQLKEFKNYSLPLARIKKIMKADVDVNMIASEVPVVFARATEMFILELTIRAWNVAAGHKRRTMLRN 128
                                    799******8888******************************************************************* PP

                          NF-YC  78 diaaavtrtdifdflvdivprdel 101
                                    dia a+++tdifdflvdi p +++
  evm.model.AsparagusV1_08.2490 129 DIAVAIAKTDIFDFLVDIAPVENT 152
                                    *******************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MNRIPMDQYG QPAMVLSFAE QLQYQIPIEQ YYGQPAKVLS LAEQQQEMQL HAFWTKQMVE  60
IEQLKEFKNY SLPLARIKKI MKADVDVNMI ASEVPVVFAR ATEMFILELT IRAWNVAAGH  120
KRRTMLRNDI AVAIAKTDIF DFLVDIAPVE NTKTKEVNEP ESVPYRPFPP QPENPAAGMV  180
IVSMMEKPVD NFQWGNDNGF DFGDGSKNNG E*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-45NF-YC family protein