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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | evm.model.AsparagusV1_08.2722 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 440aa MW: 50535.3 Da PI: 7.612 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 88.4 | 1e-27 | 70 | 158 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtk 80
fY +YA+++GFsvr+sks++s+++++i++r+fvCskeg++ ++++ + k++r+r++ r gC+a+++v +++ g+w+vtk
evm.model.AsparagusV1_08.2722 70 FYMAYASRIGFSVRISKSRRSRNDESIIMRRFVCSKEGYHMKKENFdDGKKKRRRPTIREGCNAMIEVIQKYYGRWVVTK 149
9*************************************9988777657889999************************** PP
FAR1 81 leleHnHel 89
l++eHnH +
evm.model.AsparagusV1_08.2722 150 LVTEHNHIV 158
*******76 PP
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| 2 | FAR1 | 82.1 | 9.6e-26 | 192 | 281 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtk 80
fY +YA+++GF+vr++ s++s+r++++++r+fvC+keg++ e+++ ++k++r+r+ tr gCka+++v k++ ++w v+k
evm.model.AsparagusV1_08.2722 192 FYYAYASRIGFDVRIRLSRRSTRDESFVMRRFVCTKEGYAPLEENSdESKKKRNRTPTREGCKAMFEVMKKDYDRWIVSK 271
9**************************************9887777467888999************************* PP
FAR1 81 leleHnHela 90
l+ eH+H+la
evm.model.AsparagusV1_08.2722 272 LVMEHTHDLA 281
*******996 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 440 aa Download sequence |
MESTSSDDEE SLRDNNVDLN DDNLEHHLTL DVSNHLAESD NIFSSHQQFS ENPEPFVGME 60 FESEEAAKLF YMAYASRIGF SVRISKSRRS RNDESIIMRR FVCSKEGYHM KKENFDDGKK 120 KRRRPTIREG CNAMIEVIQK YYGRWVVTKL VTEHNHIVAA PSRVRYIAPE EYADMEPFLG 180 MEFPSHEAAQ TFYYAYASRI GFDVRIRLSR RSTRDESFVM RRFVCTKEGY APLEENSDES 240 KKKRNRTPTR EGCKAMFEVM KKDYDRWIVS KLVMEHTHDL AIAPSKVHYI QSQTEVVVLA 300 KSGTVNREKP VALANSGPQH VYLCSQKVYG WRYKEMLCVE LLMNPFSVFC QPPNRGYHYG 360 CPSGPVRAVQ KALPGPEPRP DQFWAEHWAG LRMATGLGWA VTHTEPAYSG SGLIGRLAYE 420 LDMDLFLKPM SELKPGSQT* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 119 | 124 | KKKRRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G06250.1 | 2e-36 | FAR1 family protein | ||||




