PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.2766

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 304aa MW: 35273.1 Da PI: 8.8729

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.2766	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.1e-05	29	53	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C dC ++rk++L+rH+ +H evm.model.AsparagusV1_08.2766 29 FTCLieDCYLNYRRKDHLNRHLLKH 53 799999*****************99 PP
2	zf-C2H2	14.9	7.9e-05	58	83	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp +C+k+F + n++rH + H evm.model.AsparagusV1_08.2766 58 FDCPmeNCKKRFAFQGNMTRHVKEmH 83 679999****************9988 PP
3	zf-C2H2	19.5	2.7e-06	95	119	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ Cgk+F+ s L++H +H evm.model.AsparagusV1_08.2766 95 YICSevGCGKTFKYASKLRKHEDSH 119 89999****************9888 PP
4	zf-C2H2	12.8	0.00037	129	152	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C C k F +++ Lk H+++ H evm.model.AsparagusV1_08.2766 129 CAepGCLKAFANSDCLKAHMQSsH 152 55559***************9988 PP
5	zf-C2H2	21.4	6.6e-07	186	210	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C ++Fs+ksnL++Hi+ H evm.model.AsparagusV1_08.2766 186 KCNfqGCQYTFSNKSNLNKHIKAvH 210 79999****************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MDQYQVGDLL RSSIKTASIH AISSYERPFT CLIEDCYLNY RRKDHLNRHL LKHQGKLFDC 60 PMENCKKRFA FQGNMTRHVK EMHGDESSVE GEKQYICSEV GCGKTFKYAS KLRKHEDSHV 120 KLDYVEVICA EPGCLKAFAN SDCLKAHMQS SHRHVLCETC GTQQLKKNFK RHLRIHEGNV 180 ETERIKCNFQ GCQYTFSNKS NLNKHIKAVH EELRPFPCLF SGCGQKFSYK HVRDNHEKSG 240 AHVHVLGDFL EADERWRSRP RGGRKRKDFS VEMLMRKRVA SLDQDSAVND GINYLRWLLS 300 DDQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	267	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	1e-100	C2H2 family protein