PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.278
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 300aa    MW: 33791.6 Da    PI: 6.3672
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.278genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg W++eEde+l++++  +G g+W+ ++++ g+ R++k+c++rw +yl
  evm.model.AsparagusV1_08.278 14 RGLWSPEEDEKLIRYISTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                                  788*******************************************97 PP
2Myb_DNA-binding57.14.3e-1867111147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rgr+T+eE++l++ ++++ G++ W+ Ia++++ gRt++++k++w+++
  evm.model.AsparagusV1_08.278  67 RGRFTQEEEKLIISLHAMVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                                   89********************.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIS THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TQEEEKLIIS LHAMVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPT  120
TPSSTSPPSA ELINPSYNSN NQFDAFTSQN MPPASATSHQ DAIFPYHCPL FMFDTSIGDH  180
NNGGNIGLSS EVWNPNIQHQ DQAVHNSFFA YNTSSMDSNY LPPLVDGMAG MVQIGEDGDP  240
INRECFEKQD VSGWVETQNY PSLLIWEQIQ GELVGDHDLS STTSSNIERM AAGSFPSSQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.15e-86MYB family protein