PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.2840
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 240aa    MW: 27167.1 Da    PI: 7.4198
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.2840genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd++l++ +   G  +W+++++  g+ R++k+c++rw +yl
  evm.model.AsparagusV1_08.2840 14 KGPWTAEEDKKLINFILNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                                   79******************************99************97 PP
2Myb_DNA-binding52.21.4e-1671111547
                                    -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    +  E++  +d++ qlG++ W++Ia++++ gRt++++k++w+++
  evm.model.AsparagusV1_08.2840  71 SDSEEKMVIDLHSQLGNR-WSKIAAHLP-GRTDNEIKNHWNTH 111
                                    788***************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGRQPCCEKV GLKKGPWTAE EDKKLINFIL NNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDSEEKMVID LHSQLGNRWS KIAAHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPLTHNPIS SNSAKTQAEV KQEQEEEQSK SRAFCIDDVP MILPHEILVP NHSTSSPSIS  180
STSSSSSSDP LLKVPTMEWQ ESMTLWGLDD LMGWDSTFCC DDVDGKLAFD QEPWKFELF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.13e-89MYB family protein